Oridb – faq

The Saccharomyces Genome Database (SGD) are in the process of adding the confirmed replication origin sites (ARS) shown in OriDB. Data recovery iso The putative replication origin sites described in OriDB will only be added to SGD once they have been confirmed. Iphone 6 data recovery software As SGD includes the addition origin sites they will include links to the appropriate OriDB record.


Cpu z database How are replication origin sites named?

Only confirmed replication origins have been named – this is Saccharomyces Genome Database (SGD) standard practice. Data recovery kickass Putative replication origins can conveniently be referred to either by a location based name (such as ARS at II-774 to refer to the origin 774 kb from the left end of chromosome II) or where available a proposed ARS name (proARS; e.g. A database can best be described as proARS227).

The independent studies that identified S. Os x database pombe replication origins have used a range of naming conventions that have resulted in different names being assigned to the same origin. Database field To consolidate replication origin naming in S. Data recovery diy pombe we have assigned each S. Database transaction pombe replication origin site a systematic name based upon the chromosome number (in roman numerals) and the chromosomal coordinate. Data recovery mac hard drive Hence the origin on chromosome 1 at 3060 kb is named ori-I-3060.

OriDB web pages can be viewed through any modern web browser. H2 database tutorial We have tested the pages on Safari v4+ (Mac OS X) and IE8+ (Windows) and have successfully viewed them with other browsers, such as Google Chrome v15 and Firefox v7 (Mac OS X and Windows). Database interview questions Most of the pages use Javascript and the graphics are in SVG format (for modern browsers) and VML format (for legacy browsers). R studio data recovery free download Why does my browser report a slow running script?

This message refers to the scripts that draw the graphic display of data. Data recovery bad hard drive On slower computers or legacy web browsers these scripts may be reported as slow running. Database field definition If you allow the script to continue running the graphics should load correctly. Data recovery windows 7 How do I cite OriDB?

The 2012 Nucleic Acids Research Database Issue includes a paper describing the updated and extended OriDB. Nexus 4 data recovery This paper can be used as a reference for OriDB as a database. Database version 706 See this page for studies that have cited OriDB.

OriDB is a collation of previously published data and at present does not include any unpublished results. Cindia data recovery Therefore you should cite the relevant original paper as shown on the Reference for this Origin tab page for each Origin Site.

Probably! Please contact us with additional data that you would like us to include in OriDB. Database tutorial We will give priority to genome-wide datasets, but will also include data relevant to individual origins where appropriate. R database packages If you have a large dataset that you would like to be available at the time of publication please contact us with as much advanced notice as possible. Database disk image is malformed Can OriDB display my unpublished data?

At present OriDB only includes published datasets. Windows 8 data recovery software This ensures that all work has undergone peer review and saves us from having to make difficult calls as to which datasets warrant inclusion. Database naming standards However, we understand that there are high quality, unpublished datasets that would be of interest to OriDB users. Data recovery training online Therefore, in the long term we may include a limited number of unpublished datasets where we feel there is good justification for doing so. Database query Any such datasets will be clearly indicated. Database isolation levels What about other model organisms?

At present OriDB is limited to the budding yeast, S. Database version control cerevisiae, and the fission yeast, S. Database record definition pombe. Database glossary In the long term we would be interested in including other model systems as more data becomes available. Data recovery druid If you have genome-wide DNA replication origin mapping data and/or are interested in collaborating on developing OriDB for other model systems please contact us.

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